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  • Bringing the Tidyverse to Python: plotnine, siuba, and pyjanitor

    calendar Nov 23, 2025 · 7 min read · code Plots  ·
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    Bringing the Tidyverse to Python: plotnine, siuba, and pyjanitor

    Learn how to implement a tidy and expressive R-like data analysis pipeline in Python, complete with dplyr-style transformations and ggplot-style plots.


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  • Use uv for python and forget about anything else!

    calendar Oct 14, 2025 · 5 min read · uv  ·
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    Use uv for python and forget about anything else!

    Replace pip & virtualenvwrapper with uv for instant, reproducible Python environments.


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Alfonso Saera Vila

Welcome to 'Love, DNA & Code' my blog about new bioinformatics tools, single-cell & spatial applications, AI, and more.
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Featured Posts

  • Visium HD cell segmentation with Bin2Cell
  • Single cell in Python: Scanpy and AnnData

Recent Posts

  • The Basics of Matrix Multiplication
  • Autoencoders for Single Cell Data Analysis
  • BiocPy: Bioconductor in Python
  • Bringing the Tidyverse to Python: plotnine, siuba, and pyjanitor
  • Use uv for python and forget about anything else!
  • Building Your First Nextflow Pipeline: PART 4 - Polish your pipeline
  • Building Your First Nextflow Pipeline: PART 3 - Modularization & Configurable settings
  • Building Your First Nextflow Pipeline: PART 2 - Multiple Samples

Categories

BIOINFORMATICS 22 R 12 PYTHON 11 TECHNOLOGY 5 NEXTFLOW 4 CODE 2

Tags

CODE 18 SINGLE CELL 18 RNASEQ 10 BIOCONDUCTOR 6 AI 4 DIMENSIONAL REDUCTION 4 PSEUDOALIGNMENT 4 CELL SEGMENTATION 3 DEEP LEARNING 3 PSEUDOTIME 3 PYTHON 3 SPATIAL 3 PLOTS 2 RNA VELOCITY 2
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AI4 BIOCONDUCTOR6 CELL ANNOTATION1 CELL SEGMENTATION3 CHATGPT1 CODE18 DEEP LEARNING3 DIMENSIONAL REDUCTION4 INDEX1 LLM1 PHATE1 PLOTS2 PSEUDOALIGNMENT4 PSEUDOTIME3 PYTHON3 RNA VELOCITY2 RNASEQ10 SCANPY1 SCVELO1 SEURAT1 SINGLE CELL18 SPATIAL3 T-SNE1 TENSORFLOW1 TRAJECTORY ANALYSIS2 UMAP1 UV1
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Copyright © 2008–2025, Alfonso Saera plus the clarity & Hugo Authors

Copyright  COPYRIGHT © 2008–2025, ALFONSO SAERA PLUS THE CLARITY & HUGO AUTHORS. All Rights Reserved

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