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  • ENACT Visium HD cell segmentation and annotation

    calendar Apr 9, 2025 · 13 min read · Python Spatial Cell Segmentation Cell Annotation  ·
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    ENACT Visium HD cell segmentation and annotation

    See ENACT, a complete end-to-end pipeline that includes Visium HD Cell Segmentation and Cell type annotation, in action.


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  • Visium HD cell segmentation with Bin2Cell

    calendar Mar 26, 2025 · 16 min read · Python Spatial Cell Segmentation  ·
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    Visium HD cell segmentation with Bin2Cell

    Moving beyond nuclei segmentation, this post explores Bin2Cell for full cell segmentation in Visium HD spatial data.


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  • Using TensorFlow in 2025

    calendar Mar 22, 2025 · 2 min read · AI Deep Learning TensorFlow  ·
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    Using TensorFlow in 2025

    Easiest way to install and use TensorFlow


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  • Visium HD segmentation

    calendar Mar 19, 2025 · 18 min read · Python Spatial Cell Segmentation  ·
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    Visium HD segmentation

    Nuclei segmentation from Visium HD data


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  • Performing Exploratory analysis without writing a line of code

    calendar Feb 20, 2025 · 7 min read · AI ChatGPT code LLM Plots  ·
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    Performing Exploratory analysis without writing a line of code

    This post will show you how to use LLM AI tools to write code for you.


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Alfonso Saera Vila

Welcome to 'Love, DNA & Code' my blog about new bioinformatics tools, single-cell & spatial applications, AI, and more.
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Featured Posts

  • Visium HD cell segmentation with Bin2Cell
  • Single cell in Python: Scanpy and AnnData

Recent Posts

  • Pseudotime Trajectories with Slingshot
  • Single Cell PCA Deep Dive
  • ENACT Visium HD cell segmentation and annotation
  • Using TensorFlow in 2025
  • Visium HD segmentation
  • Single cell Bioconductor's choice: SCE
  • Single cell in R: Seurat
  • Performing Exploratory analysis without writing a line of code

Categories

BIOINFORMATICS 8 R 5 TECHNOLOGY 5 PYTHON 2

Tags

CODE 6 SINGLE CELL 5 BIOCONDUCTOR 3 CELL SEGMENTATION 3 PYTHON 3 RNASEQ 3 SPATIAL 3 AI 2 CELL ANNOTATION 1 CHATGPT 1 DEEP LEARNING 1 INDEX 1 LLM 1 PLOTS 1
All Tags
AI2 BIOCONDUCTOR3 CELL ANNOTATION1 CELL SEGMENTATION3 CHATGPT1 CODE6 DEEP LEARNING1 INDEX1 LLM1 PLOTS1 PSEUDOTIME1 PYTHON3 RNASEQ3 SEURAT1 SINGLE CELL5 SPATIAL3 TENSORFLOW1 TRAJECTORY ANALYSIS1
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Copyright © 2008–2025, Alfonso Saera plus the clarity & Hugo Authors

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