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  • Using TensorFlow in 2025

    calendar Mar 22, 2025 · 2 min read · AI Deep Learning TensorFlow  ·
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    Using TensorFlow in 2025

    Easiest way to install and use TensorFlow


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  • Visium HD segmentation

    calendar Mar 19, 2025 · 18 min read · Python Spatial Cell Segmentation  ·
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    Visium HD segmentation

    Nuclei segmentation from Visium HD data


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  • Single cell Bioconductor's choice: SCE

    calendar Mar 13, 2025 · 19 min read · single cell Bioconductor RNAseq code  ·
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    Single cell Bioconductor's choice: SCE

    Explore SingleCellExperiment in R! Master data structures & workflows to handle single-cell RNA-seq data effectively in your research projects.


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  • Single cell in R: Seurat

    calendar Mar 6, 2025 · 1614 min read · single cell Seurat RNAseq code  ·
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    Single cell in R: Seurat

    Get started with Seurat, the Satija's lab R package for single-cell analysis. This beginner-friendly guide covers object's structure and essential functions.


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  • Single cell in Python: Scanpy and AnnData

    calendar Feb 27, 2025 · 8 min read · single cell code  ·
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    Single cell in Python: Scanpy and AnnData

    Unlock the power of Scanpy! Discover how to efficiently store and manage single-cell RNA-seq data using AnnData in Python.


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  • Performing Exploratory analysis without writing a line of code

    calendar Feb 20, 2025 · 7 min read · AI ChatGPT code LLM Plots  ·
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    Performing Exploratory analysis without writing a line of code

    This post will show you how to use LLM AI tools to write code for you.


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Alfonso Saera Vila

Welcome to 'Love, DNA & Code' my blog about new bioinformatics tools, single-cell & spatial applications, AI, and more.
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Featured Posts

  • Visium HD cell segmentation with Bin2Cell
  • Single cell in Python: Scanpy and AnnData

Recent Posts

  • Pseudoalignment for single cell RNA-seq with alevin-fry
  • Pairwise Controlled Manifold Approximation (PaCMAP) for Single Cell
  • Single Cell Dimensional Reduction: Phate
  • Single Cell Dimensional Reduction: t-SNE vs UMAP
  • Pseudotime Trajectory vs RNA Velocity
  • Understanding Cellular Dynamics with RNA Velocity
  • Pseudotime Trajectories with Slingshot
  • Single Cell PCA Deep Dive

Categories

BIOINFORMATICS 14 R 9 PYTHON 6 TECHNOLOGY 5

Tags

CODE 11 SINGLE CELL 11 BIOCONDUCTOR 4 RNASEQ 4 CELL SEGMENTATION 3 DIMENSIONAL REDUCTION 3 PSEUDOTIME 3 PYTHON 3 SPATIAL 3 AI 2 RNA VELOCITY 2 TRAJECTORY ANALYSIS 2 CELL ANNOTATION 1 CHATGPT 1
All Tags
AI2 BIOCONDUCTOR4 CELL ANNOTATION1 CELL SEGMENTATION3 CHATGPT1 CODE11 DEEP LEARNING1 DIMENSIONAL REDUCTION3 INDEX1 LLM1 PHATE1 PLOTS1 PSEUDOTIME3 PYTHON3 RNA VELOCITY2 RNASEQ4 SCANPY1 SCVELO1 SEURAT1 SINGLE CELL11 SPATIAL3 T-SNE1 TENSORFLOW1 TRAJECTORY ANALYSIS2 UMAP1
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Copyright © 2008–2025, Alfonso Saera plus the clarity & Hugo Authors

Copyright  COPYRIGHT © 2008–2025, ALFONSO SAERA PLUS THE CLARITY & HUGO AUTHORS. All Rights Reserved

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