Love, DNA & Code

Visium HD segmentation

Mar 19, 2025 · 18 min read · Python Spatial Cell Segmentation ·

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Nuclei segmentation from Visium HD data

Single cell Bioconductor's choice: SCE

Mar 13, 2025 · 19 min read · single cell Bioconductor RNAseq code ·

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Explore SingleCellExperiment in R! Master data structures & workflows to handle single-cell RNA-seq data effectively in your research projects.

Single cell in R: Seurat

Mar 6, 2025 · 1614 min read · single cell Seurat RNAseq code ·

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Get started with Seurat, the Satija's lab R package for single-cell analysis. This beginner-friendly guide covers object's structure and essential functions.

Single cell in Python: Scanpy and AnnData

Feb 27, 2025 · 8 min read · single cell code ·

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Unlock the power of Scanpy! Discover how to efficiently store and manage single-cell RNA-seq data using AnnData in Python.

Performing Exploratory analysis without writing a line of code

Feb 20, 2025 · 7 min read · AI ChatGPT code LLM Plots ·

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Performing Exploratory analysis without writing a line of code

This post will show you how to use LLM AI tools to write code for you.