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  • ENACT Visium HD cell segmentation and annotation

    calendar Apr 9, 2025 · 14 min read · Python Spatial Cell Segmentation Cell Annotation  ·
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    ENACT Visium HD cell segmentation and annotation

    See ENACT, a complete end-to-end pipeline that includes Visium HD Cell Segmentation and Cell type annotation, in action.


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  • Visium HD cell segmentation with Bin2Cell

    calendar Mar 26, 2025 · 16 min read · Python Spatial Cell Segmentation  ·
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    Visium HD cell segmentation with Bin2Cell

    Moving beyond nuclei segmentation, this post explores Bin2Cell for full cell segmentation in Visium HD spatial data.


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  • Visium HD segmentation

    calendar Mar 19, 2025 · 18 min read · Python Spatial Cell Segmentation  ·
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    Visium HD segmentation

    Nuclei segmentation from Visium HD data


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Alfonso Saera Vila

Welcome to 'Love, DNA & Code' my blog about new bioinformatics tools, single-cell & spatial applications, AI, and more.
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Featured Posts

  • Skills: Teach Claude Code Bioinformatics
  • From Prompt to Pipeline: Building a scRNA-seq Workflow with Claude Code and Nextflow
  • Claude Code for Bioinformaticians: Your AI Coding Assistant in the Terminal
  • BiocPy: Bioconductor in Python
  • Building Your First Nextflow Pipeline: PART 4 - Polish your pipeline
  • Single Cell Dimensional Reduction: t-SNE vs UMAP
  • Pseudotime Trajectory vs RNA Velocity
  • Single Cell PCA Deep Dive

Recent Posts

  • OpenClaw Setup
  • The Basics of Matrix Multiplication
  • Autoencoders for Single Cell Data Analysis
  • Bringing the Tidyverse to Python: plotnine, siuba, and pyjanitor
  • Use uv for python and forget about anything else!
  • Building Your First Nextflow Pipeline: PART 3 - Modularization & Configurable settings
  • Building Your First Nextflow Pipeline: PART 2 - Multiple Samples
  • Alignment or Pseudoalignment: Alevin-fry vs Cell Ranger comparison

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BIOINFORMATICS 22 PYTHON 12 R 12 CODE 6 TECHNOLOGY 6 NEXTFLOW 5 BIONFORMATICS 1 OPENCLAW 1

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