RNAseq

Understanding Cellular Dynamics with RNA Velocity

Apr 28, 2025 · 7 min read · RNA velocity scVelo scanpy Pseudotime single cell RNAseq ·

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Understanding Cellular Dynamics with RNA Velocity

How to use scVelo to explore gene expression dynamics and differentiation

Pseudotime Trajectories with Slingshot

Apr 24, 2025 · 12 min read · code Trajectory analysis Pseudotime single cell RNAseq Bioconductor ·

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Using Slingshot to calculate single cell trajectories

Single cell Bioconductor's choice: SCE

Mar 13, 2025 · 19 min read · single cell Bioconductor RNAseq code ·

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Explore SingleCellExperiment in R! Master data structures & workflows to handle single-cell RNA-seq data effectively in your research projects.

Single cell in R: Seurat

Mar 6, 2025 · 1614 min read · single cell Seurat RNAseq code ·

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Get started with Seurat, the Satija's lab R package for single-cell analysis. This beginner-friendly guide covers object's structure and essential functions.