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Building Your First Nextflow Pipeline: PART 4 - Polish your pipeline
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Aug 31, 2025
· 8 min read
·
code
single cell
pseudoalignment
RNAseq
·
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Building Your First Nextflow Pipeline: PART 3 - Modularization & Configurable settings
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Aug 30, 2025
· 5 min read
·
code
single cell
pseudoalignment
RNAseq
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Building Your First Nextflow Pipeline: PART 2 - Multiple Samples
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Aug 27, 2025
· 9 min read
·
code
single cell
pseudoalignment
RNAseq
·
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Alignment or Pseudoalignment: Alevin-fry vs Cell Ranger comparison
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Aug 6, 2025
· 9 min read
·
Bioconductor
code
single cell
RNAseq
·
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Building Your First Nextflow Pipeline: PART 1 - One sample at a time
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Jul 30, 2025
· 8 min read
·
code
single cell
pseudoalignment
RNAseq
·
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Understanding Cellular Dynamics with RNA Velocity
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Apr 28, 2025
· 7 min read
·
RNA velocity
scVelo
scanpy
Pseudotime
single cell
RNAseq
·
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Pseudotime Trajectories with Slingshot
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Apr 24, 2025
· 12 min read
·
code
Trajectory analysis
Pseudotime
single cell
RNAseq
Bioconductor
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Single cell Bioconductor's choice: SCE
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Mar 13, 2025
· 19 min read
·
single cell
Bioconductor
RNAseq
code
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Single cell in R: Seurat
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Mar 6, 2025
· 1614 min read
·
single cell
Seurat
RNAseq
code
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